PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025385-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 215aa    MW: 23764.9 Da    PI: 10.3351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025385-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll  +++++G g W++++ + g++R++k+c++rw++yl
    NNU_025385-RA 10 KGSWTREEDALLRXCIEKYGEGKWHLVPXRAGLRRCRKSCRLRWLNYL 57
                     799*******************************************97 PP

2Myb_DNA-binding27.11e-0867892346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     tW++Ia +++ gRt++++k++w+k
    NNU_025385-RA 67 TWSLIAGRLP-GRTANDIKNYWNK 89
                     8*********.***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.147561IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-22868IPR009057Homeodomain-like
SMARTSM007171.2E-13959IPR001005SANT/Myb domain
SuperFamilySSF466898.79E-211089IPR009057Homeodomain-like
PfamPF002498.6E-151057IPR001005SANT/Myb domain
CDDcd001671.50E-111257No hitNo description
PfamPF002492.8E-66789IPR001005SANT/Myb domain
PROSITE profilePS500905.4246891IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-96989IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEGRSLGLIK GSWTREEDAL LRXCIEKYGE GKWHLVPXRA GLRRCRKSCR LRWLNYLKPD  60
IKREKFTWSL IAGRLPGRTA NDIKNYWNKS SISSSSSTLG RFHAVMVFDI FLLSFKAISS  120
LADFEEQAEL LALGRANTRQ SSPLSRVVAN PSVHLGGIEG LPVEGRKNQQ CPKAMTSPLS  180
STTVVDGTTL GTMVDDLAAT APILGLWTNA TPLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-148985110B-MYB
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.14e-46myb domain protein 114